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| DOI: | 10.1007/s00122-007-0567-4 |
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| Web URL(s): | https://link.springer.com/article/10.1007%2Fs00122-007-0567-4
Last checked: 10/05/2017 |
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| Publication Type:
| Refereed |
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| Author(s): | Saski, Christopher;
Lee, Seung-Bum;
Fjellheim, Siri;
Guda, Chittibabu;
Jansen, Robert K.;
Luo, Hong;
Tomkins, Jeffrey;
Rognli, Odd Arne;
Daniell, Henry;
Clarke, Jihong Liu |
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| Author Affiliation: | Saski and Tomkins: Clemson University Genomics Institute, Clemson University, Biosystems Research Complex, Clemson, SC; Lee and Daniell: Department of Molecular Biology and Microbiology, Biomolecular Science, University of Central Florida, Orlando, FL; Fjellheim and Rognli: Department of Plant and Environmental Sciences, Norwegian University of Life Sciences, Norway; Guda: Gen*NY*Sis Center for Excellence in Cancer Genomics and Department of Epidemiology and Biostatistics, State University of New York at Albany, New York, NY; Jansen: Section of Integrative Biology and Institute of Cellular and Molecular Biology, University of Texas, Austin, TX; Luo: Department of Genetics and Biochemistry, Clemson University, Clemson, SC; Clarke: Department of Genetics and Biotechnology, Norwegian Institute for Agricultural and Environmental Sciences, Norway |
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| Title: | Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes |
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| Source: | TAG: Theoretical and Applied Genetics. Vol. 115, No. 4, August 2007, p. 571-590. |
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| Publishing Information: | Berlin, Germany: Springer |
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| # of Pages: | 20 |
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| Related Web URL: | http://www.springerlink.com/content/t6743l6l212j687q/
Last checked: 04/02/2012
Notes: Abstract only
http://www.springerlink.com/content/2g614l8pl4668082/fulltext.html
Last checked: 04/02/2012
Notes: Correction note
http://www.springerlink.com/content/2g614l8pl4668082/fulltext.pdf
Last checked: 04/02/2012
Requires: Adobe Acrobat
Notes: Correction note |
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| Keywords: | TIC Keywords: Agrostis stolonifera; Chloroplasts; Genetic analysis; Genomes; Hordeum vulgare; Simple sequence repeats; Sorghum bicolor
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| Abstract/Contents: | "Comparisons of complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera to six published grass chloroplast genomes reveal that gene content and order are similar but two microstructural changes have occurred. First, the expansion of the IR at the SSC/IRa boundary that duplicates a portion of the 5' end of ndhH is restricted to the three genera of the subfamily Pooideae (Agrostis, Hordeum and Triticum). Second, a 6 bp deletion in ndhK is shared by Agrostis, Hordeum, Oryza and Triticum, and this event supports the sister relationship between the subfamilies Erhartoideae and Pooideae. Repeat analysis identified 19-37 direct and inverted repeats 30 bp or longer with a sequence identity of at least 90%. Seventeen of the 26 shared repeats are found in all the grass chloroplast genomes examined and are located in the same genes or intergenic spacer (IGS) regions. Examination of simple sequence repeats (SSRs) identified 1621 potential polymorphic SSRs. Five IGS regions have 100% sequence identity among Zea mays, Saccharum officinarum and Sorghum bicolor, whereas no spacer regions were identical among Oryza sativa, Triticum aestivum, H. vulgare and A. stolonifera despite their close phylogenetic relationship. Alignment of EST sequences and DNA coding sequences identified six CU conversions in both Sorghum bicolor and H. vulgare but only one in A. stolonifera. Phylogenetic trees based on DNA sequences of 61 protein-coding genes of 38 taxa using both maximum parsimony and likelihood methods provide moderate support for a sister relationship between the subfamilies Erhartoideae and Pooideae." |
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| Language: | English |
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| References: | 100+ |
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| Note: | Correction appears in TAG: Theoretical and Applied Genetics, 115(4) August 2007, p. 591: "Unfortunately the last sentence of the first paragraph in the Introduction contains errors. The correct sentence is given here. The size of this circular genome varies from 35 to 217 kb but among photosynthetic organisms the majority are between 115 and 165 kb (Jansen et al. 2005)."
Figures
Tables
Graphs |
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| ASA/CSSA/SSSA Citation (Crop Science-Like - may be incomplete):
Saski, C., S.-B. Lee, S. Fjellheim, C. Guda, R. K. Jansen, H. Luo, et al. 2007. Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes. Theor. Appl. Genet. 115(4):p. 571-590. |
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| DOI: 10.1007/s00122-007-0567-4 |
| Web URL(s):
https://link.springer.com/article/10.1007%2Fs00122-007-0567-4
Last checked: 10/05/2017 |
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MSU catalog number: b2203373 |
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