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DOI: | 10.2135/cropsci2015.08.0517 |
Web URL(s): | https://dl.sciencesocieties.org/publications/cs/articles/56/3/1206 Last checked: 05/20/2016 Access conditions: Item is within a limited-access website https://dl.sciencesocieties.org/publications/cs/pdfs/56/3/1206 Last checked: 05/20/2016 Requires: PDF Reader Access conditions: Item is within a limited-access website |
Publication Type:
| Refereed |
Author(s): | Tanaka, Hidenori;
Hirakawa, Hideki;
Muguerza, Melody;
Hashiguchi, Masatsugu;
Tabata, Satoshi;
Akashi, Ryo;
Sato, Shusei |
Author Affiliation: | Tanaka, Muguerza, Hashiguchi, and Akashi: Faculty of Agriculture, Univ. of Miyazaki, Miyazaki; Hirakawa, Tabata, and Sato: Kazusa DNA Research Institute, Kisarazu, Chiba; Sato: Graduate School of Life Sciences, Tohoku Univ., Aoba-ku, Sendai, Japan |
Title: | The complete chloroplast genome sequence of Zoysia matrella (L.) Merr. |
Column Name: | Genomics, molecular genetics & biotechnology - Note Other records with the "Genomics, molecular genetics & biotechnology - Note" Column
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Source: | Crop Science. Vol. 56, No. 3, May/June 2016, p. 1206-1212. |
Publishing Information: | Madison, Wisconsin: Crop Science Society of America |
# of Pages: | 7 |
Related Web URL: | https://dl.sciencesocieties.org/publications/cs/abstracts/56/3/1206 Last checked: 05/20/2016 Notes: Abstract only |
Keywords: | TIC Keywords: Chloroplasts; Evolution; Gene mapping; Genetic analysis; Genetic code; Genetic structure; Genetic variability; Molecular genetics; Phylogenetic analysis; Zoysia matrella
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Abstract/Contents: | "Zoysia Willd. include one of the best-known turfgrasses worldwide owing to its adaptability in a wide range of environments and its tolerance to abiotic stresses including soil salinity, soil acidity, cold, drought, and heat. Here, we report the complete chloroplast genome sequence of Zoysia matrella (L.) Merr. obtained by a combination of 454 pyrosequencing and Sanger sequencing platforms. The entire chloroplast genome of Zoysia maps as a circular molecule of 135,810 bp built with a quadripartite organization: two inverted repeats (IRs) of 20,960 bp separated by a large single copy (LSC) sequence of 81,306 bp and a small single copy (SSC) sequence of 12,584 bp. The genome contains 131 unique genes, of which 20 are duplicated in the IRs. We identified a total of 42 simple sequence repeat (SSR) markers with ā„10 repeated nucleotides. Phylogenetic analysis revealed a close relationship between Zoysia and Neyraudia. This study identified genes, insertion-deletion (InDel), and SSR markers that may be useful in inferring evolutionary relationships at both the intra- and interspecific levels. Moreover, the Zoysia chloroplast genome sequence will be helpful in understanding phylogenetic and evolutionary relationships with other species in the Poaceae family and the Chloridoideae subfamily and will be valuable for biogenetic engineering, plant breeding, and ecological conservation." |
Language: | English |
References: | 32 |
Note: | Figures Tables |
| ASA/CSSA/SSSA Citation (Crop Science-Like - may be incomplete): Tanaka, H., H. Hirakawa, M. Muguerza, M. Hashiguchi, S. Tabata, R. Akashi, et al. 2016. The complete chloroplast genome sequence of Zoysia matrella (L.) Merr.. Crop Sci. 56(3):p. 1206-1212. |
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| DOI: 10.2135/cropsci2015.08.0517 |
| Web URL(s): https://dl.sciencesocieties.org/publications/cs/articles/56/3/1206 Last checked: 05/20/2016 Access conditions: Item is within a limited-access website https://dl.sciencesocieties.org/publications/cs/pdfs/56/3/1206 Last checked: 05/20/2016 Requires: PDF Reader Access conditions: Item is within a limited-access website |
| MSU catalog number: b2211522a |
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